MLInterfaces

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see MLInterfaces.

Uniform interfaces to R machine learning procedures for data in Bioconductor containers


Bioconductor version: 3.7

This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.

Author: Vince Carey <stvjc at channing.harvard.edu>, Robert Gentleman, Jess Mar, and contributions from Jason Vertrees <jv at cs.dartmouth.edu> and Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("MLInterfaces")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MLInterfaces")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLInterfaces")
A machine learning tutorial: applications of the Bioconductor MLInterfaces package to expression and ChIP-Seq data PDF R Script
MLInterfaces Computer Cluster PDF R Script
MLInterfaces devel for schema-based MLearn PDF R Script
MLInterfaces Primer PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, Clustering, Software
Version 1.60.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License LGPL
Depends R (>= 3.5), methods, BiocGenerics(>= 0.13.11), Biobase, annotate, cluster
Imports gdata, pls, sfsmisc, MASS, rpart, rda, genefilter, fpc, ggvis, shiny, gbm, RColorBrewer, hwriter, threejs (>= 0.2.2), mlbench, stats4, tools, grDevices, graphics, stats
System Requirements
URL
See More
Suggests class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party
Linking To
Enhances parallel
Depends On Me a4Classif, pRoloc, proteomics, SigCheck
Imports Me
Suggests Me BiocCaseStudies
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MLInterfaces_1.60.1.tar.gz
Windows Binary MLInterfaces_1.60.1.zip
Mac OS X 10.11 (El Capitan) MLInterfaces_1.60.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MLInterfaces
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MLInterfaces
Bioc Package Browser https://code.bioconductor.org/browse/MLInterfaces/
Package Short Url https://bioconductor.org/packages/MLInterfaces/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive