MIMOSA

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MIMOSA.

Mixture Models for Single-Cell Assays


Bioconductor version: 3.7

Modeling count data using Dirichlet-multinomial and beta-binomial mixtures with applications to single-cell assays.

Author: Greg Finak <gfinak at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>

Citation (from within R, enter citation("MIMOSA")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MIMOSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MIMOSA")
MIMOSA: Mixture Models For Single Cell Assays PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, FlowCytometry, Software
Version 1.18.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License Artistic-2.0
Depends R (>= 3.0.2), MASS, plyr, reshape, Biobase, ggplot2
Imports methods, Formula, data.table, pracma, MCMCpack, coda, modeest, testthat, Rcpp, scales
System Requirements
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Suggests parallel, knitr
Linking To Rcpp, RcppArmadillo
Enhances
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Imports Me
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Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MIMOSA_1.18.0.tar.gz
Windows Binary MIMOSA_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) MIMOSA_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MIMOSA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MIMOSA
Package Short Url https://bioconductor.org/packages/MIMOSA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive