LiquidAssociation

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see LiquidAssociation.

LiquidAssociation


Bioconductor version: 3.7

The package contains functions for calculate direct and model-based estimators for liquid association. It also provides functions for testing the existence of liquid association given a gene triplet data.

Author: Yen-Yi Ho <yho at jhsph.edu>

Maintainer: Yen-Yi Ho <yho at jhsph.edu>

Citation (from within R, enter citation("LiquidAssociation")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LiquidAssociation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LiquidAssociation")
LiquidAssociation Vignette PDF R Script
Reference Manual PDF

Details

biocViews CellBiology, GeneExpression, Genetics, Network, Pathways, Software, TimeCourse
Version 1.34.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License GPL (>=3)
Depends geepack, methods, yeastCC, org.Sc.sgd.db
Imports Biobase, graphics, grDevices, methods, stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LiquidAssociation_1.34.0.tar.gz
Windows Binary LiquidAssociation_1.34.0.zip
Mac OS X 10.11 (El Capitan) LiquidAssociation_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LiquidAssociation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LiquidAssociation
Package Short Url https://bioconductor.org/packages/LiquidAssociation/
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Old Source Packages for BioC 3.7 Source Archive