LINC

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LINC.

co-expression of lincRNAs and protein-coding genes


Bioconductor version: 3.7

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.

Author: Manuel Goepferich, Carl Herrmann

Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>

Citation (from within R, enter citation("LINC")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LINC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LINC")
LINC - Co-Expression Analysis of lincRNAs HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiologicalQuestion, GeneExpression, GeneRegulation, Software
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends R (>= 3.3.1), methods, stats
Imports Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA
System Requirements
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Suggests RUnit, BiocGenerics, knitr, biomaRt
Linking To Rcpp
Enhances
Depends On Me
Imports Me
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Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LINC_1.8.0.tar.gz
Windows Binary LINC_1.8.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) LINC_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LINC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LINC
Package Short Url https://bioconductor.org/packages/LINC/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive