IMMAN

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see IMMAN.

Interlog protein network reconstruction by Mapping and Mining ANalysis


Bioconductor version: 3.7

Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.

Author: Payman Nickchi, Abdollah Safari, Minoo Ashtiani, Mohieddin Jafari

Maintainer: Minoo Ashtiani <m_ashtiani at pasteur.ac.ir>

Citation (from within R, enter citation("IMMAN")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IMMAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IMMAN")
IMMAN HTML R Script
Reference Manual PDF

Details

biocViews Alignment, GraphAndNetwork, Network, Proteomics, SequenceMatching, Software, SystemsBiology
Version 1.0.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends
Imports STRINGdb, Biostrings, igraph, graphics, utils, seqinr, BiocFileCache
System Requirements
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Suggests knitr, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IMMAN_1.0.0.tar.gz
Windows Binary IMMAN_1.0.0.zip
Mac OS X 10.11 (El Capitan) IMMAN_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IMMAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IMMAN
Package Short Url https://bioconductor.org/packages/IMMAN/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive