GoogleGenomics

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GoogleGenomics.

R Client for Google Genomics API


Bioconductor version: 3.7

Provides an R package to interact with the Google Genomics API.

Author: Cassie Doll, Nicole Deflaux

Maintainer: Siddhartha Bagaria <bagaria.siddhartha at gmail.com>

Citation (from within R, enter citation("GoogleGenomics")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GoogleGenomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GoogleGenomics")
Annotating Variants HTML R Script
Plotting Alignments HTML R Script
Reproducing Variant Annotation Results HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Genetics, Software, ThirdPartyClient
Version 2.2.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Apache License (== 2.0) | file LICENSE
Depends R (>= 3.1.0), GenomicAlignments(>= 1.0.1), VariantAnnotation
Imports Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson, Rsamtools, S4Vectors(>= 0.9.25), Biobase, methods, utils
System Requirements GNU make
URL https://cloud.google.com/genomics/
Bug Reports https://github.com/Bioconductor/GoogleGenomics/issues
See More
Suggests BiocStyle, RProtoBuf, httpuv, knitr, rmarkdown, testthat, ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GoogleGenomics_2.2.0.tar.gz
Windows Binary GoogleGenomics_2.2.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GoogleGenomics_2.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GoogleGenomics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GoogleGenomics
Package Short Url https://bioconductor.org/packages/GoogleGenomics/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive