Genominator

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Genominator.

Analyze, manage and store genomic data


Bioconductor version: 3.7

Tools for storing, accessing, analyzing and visualizing genomic data.

Author: James Bullard, Kasper Daniel Hansen

Maintainer: James Bullard <bullard at stat.berkeley.edu>

Citation (from within R, enter citation("Genominator")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Genominator")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Genominator")
Plotting with Genominator PDF R Script
The Genominator User Guide PDF R Script
Working with the ShortRead Package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.34.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License Artistic-2.0
Depends R (>= 2.10), methods, RSQLite, DBI (>= 0.2-5), BiocGenerics(>= 0.1.0), IRanges(>= 2.5.27), GenomeGraphs
Imports graphics, stats, utils
System Requirements
URL
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Suggests biomaRt, ShortRead, yeastRNASeq
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Genominator_1.34.0.tar.gz
Windows Binary Genominator_1.34.0.zip
Mac OS X 10.11 (El Capitan) Genominator_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Genominator
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Genominator
Package Short Url https://bioconductor.org/packages/Genominator/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive