GSRI

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GSRI.

Gene Set Regulation Index


Bioconductor version: 3.7

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("GSRI")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSRI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")
Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneRegulation, GeneSetEnrichment, Microarray, Software, Transcription
Version 2.28.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL-3
Depends R (>= 2.14.2), fdrtool
Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
System Requirements
URL
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Suggests limma, hgu95av2.db
Linking To
Enhances parallel
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSRI_2.28.0.tar.gz
Windows Binary GSRI_2.28.0.zip
Mac OS X 10.11 (El Capitan) GSRI_2.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GSRI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSRI
Package Short Url https://bioconductor.org/packages/GSRI/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive