EasyqpcR

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see EasyqpcR.

EasyqpcR for low-throughput real-time quantitative PCR data analysis


Bioconductor version: 3.7

This package is based on the qBase algorithms published by Hellemans et al. in 2007. The EasyqpcR package allows you to import easily qPCR data files as described in the vignette. Thereafter, you can calculate amplification efficiencies, relative quantities and their standard errors, normalization factors based on the best reference genes choosen (using the SLqPCR package), and then the normalized relative quantities, the NRQs scaled to your control and their standard errors. This package has been created for low-throughput qPCR data analysis.

Author: Le Pape Sylvain

Maintainer: Le Pape Sylvain <sylvain.le.pape at univ-poitiers.fr>

Citation (from within R, enter citation("EasyqpcR")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EasyqpcR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EasyqpcR")
EasyqpcR PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, Software, qPCR
Version 1.21.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>=2)
Depends
Imports plyr, matrixStats, plotrix, gWidgetsRGtk2
System Requirements
URL
See More
Suggests SLqPCR, qpcrNorm, qpcR, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EasyqpcR_1.21.0.tar.gz
Windows Binary EasyqpcR_1.21.0.zip
Mac OS X 10.11 (El Capitan) EasyqpcR_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EasyqpcR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EasyqpcR
Package Short Url https://bioconductor.org/packages/EasyqpcR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive