DBChIP

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DBChIP.

Differential Binding of Transcription Factor with ChIP-seq


Bioconductor version: 3.7

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Citation (from within R, enter citation("DBChIP")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DBChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")
DBChIP PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.24.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>= 2)
Depends R (>= 2.15.0), edgeR, DESeq
Imports
System Requirements
URL
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Suggests ShortRead, BiocGenerics
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DBChIP_1.24.0.tar.gz
Windows Binary DBChIP_1.24.0.zip
Mac OS X 10.11 (El Capitan) DBChIP_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DBChIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DBChIP
Package Short Url https://bioconductor.org/packages/DBChIP/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive