CytoML

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CytoML.

GatingML interface for openCyto


Bioconductor version: 3.7

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

Author: Mike Jiang

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("CytoML")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CytoML")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CytoML")
How to export a GatingSet to GatingML HTML R Script
How to parse gatingML into a GatingSet HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, FlowCytometry, Software
Version 1.6.5
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends
Imports flowCore(>= 1.43.10), flowWorkspace(>= 3.28.1), openCyto(>= 1.11.3), XML, data.table, flowUtils(>= 1.35.7), jsonlite, RBGL, ncdfFlow, Rgraphviz, Biobase, methods, graph, graphics, utils, base64enc, plyr, grDevices, methods, ggcyto(>= 1.8.2)
System Requirements
URL
See More
Suggests testthat, flowWorkspaceData(>= 2.11.1), knitr, parallel
Linking To
Enhances
Depends On Me
Imports Me
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Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CytoML_1.6.5.tar.gz
Windows Binary CytoML_1.6.5.zip
Mac OS X 10.11 (El Capitan) CytoML_1.6.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/CytoML
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CytoML
Bioc Package Browser https://code.bioconductor.org/browse/CytoML/
Package Short Url https://bioconductor.org/packages/CytoML/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive