CONFESS

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CONFESS.

Cell OrderiNg by FluorEScence Signal


Bioconductor version: 3.7

Single Cell Fluidigm Spot Detector.

Author: Diana LOW and Efthimios MOTAKIS

Maintainer: Diana LOW <dlow at imcb.a-star.edu.sg>

Citation (from within R, enter citation("CONFESS")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CONFESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CONFESS")
CONFESS PDF R Script
CONFESS HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBiology, Classification, Clustering, DataImport, GeneExpression, QualityControl, RNASeq, Regression, Software, TimeCourse, Visualization
Version 1.8.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends R (>= 3.3), grDevices, utils, stats, graphics
Imports methods, changepoint, cluster, contrast, data.table (>= 1.9.7), ecp, EBImage, flexmix, flowCore, flowClust, flowMeans, flowMerge, flowPeaks, foreach, ggplot2, grid, limma, MASS, moments, outliers, parallel, plotrix, raster, readbitmap, reshape2, SamSPECTRAL, waveslim, wavethresh, zoo
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown, CONFESSdata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CONFESS_1.8.0.tar.gz
Windows Binary CONFESS_1.8.0.zip
Mac OS X 10.11 (El Capitan) CONFESS_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CONFESS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CONFESS
Package Short Url https://bioconductor.org/packages/CONFESS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive