CNTools

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CNTools.

Convert segment data into a region by sample matrix to allow for other high level computational analyses.


Bioconductor version: 3.7

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")
NCTools HowTo PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.36.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL
Depends R (>= 2.10), methods, tools, stats, genefilter
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNTools_1.36.0.tar.gz
Windows Binary CNTools_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CNTools_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNTools
Package Short Url https://bioconductor.org/packages/CNTools/
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Old Source Packages for BioC 3.7 Source Archive