CCPROMISE

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CCPROMISE.

PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data


Bioconductor version: 3.7

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

Author: Xueyuan Cao <xueyuan.cao at stjude.org> and Stanley.pounds <stanley.pounds at stjude.org>

Maintainer: Xueyuan Cao <xueyuan.cao at stjude.org>

Citation (from within R, enter citation("CCPROMISE")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CCPROMISE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CCPROMISE")
An introduction to CCPROMISE PDF R Script
Reference Manual PDF

Details

biocViews GeneExpression, Microarray, Software
Version 1.6.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>= 2)
Depends R (>= 3.3.0), stats, methods, CCP, PROMISE, Biobase, GSEABase, utils
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CCPROMISE_1.6.0.tar.gz
Windows Binary CCPROMISE_1.6.0.zip
Mac OS X 10.11 (El Capitan) CCPROMISE_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CCPROMISE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CCPROMISE
Package Short Url https://bioconductor.org/packages/CCPROMISE/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive