BioCor

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see BioCor.

Functional similarities


Bioconductor version: 3.7

Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...

Author: Lluís Revilla Sancho <lluis.revilla at gmail.com>

Maintainer: Lluís Revilla Sancho <lluis.revilla at gmail.com>

Citation (from within R, enter citation("BioCor")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioCor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioCor")
About BioCor HTML R Script
Advanced usage of BioCor HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Clustering, GeneExpression, Network, NetworkEnrichment, Pathways, Software, StatisticalMethod, SystemsBiology
Version 1.4.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL-3 + file LICENSE
Depends R (>= 3.4.0)
Imports BiocParallel, Matrix, GSEABase
System Requirements
URL https://github.com/llrs/BioCor/
Bug Reports https://github.com/llrs/BioCor/issues
See More
Suggests reactome.db, org.Hs.eg.db, WGCNA, methods, GOSemSim, testthat, knitr, rmarkdown, BiocStyle, airway, DESeq2, boot, targetscan.Hs.eg.db, Hmisc
Linking To
Enhances
Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioCor_1.4.0.tar.gz
Windows Binary BioCor_1.4.0.zip
Mac OS X 10.11 (El Capitan) BioCor_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioCor
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioCor
Package Short Url https://bioconductor.org/packages/BioCor/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive