BCRANK

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see BCRANK.

Predicting binding site consensus from ranked DNA sequences


Bioconductor version: 3.7

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BCRANK")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")
BCRANK PDF R Script
Reference Manual PDF

Details

biocViews GeneRegulation, MotifDiscovery, Software
Version 1.42.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License GPL-2
Depends methods
Imports Biostrings
System Requirements
URL
See More
Suggests seqLogo
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BCRANK_1.42.0.tar.gz
Windows Binary BCRANK_1.42.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) BCRANK_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BCRANK
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BCRANK
Package Short Url https://bioconductor.org/packages/BCRANK/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive