ArrayTV

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ArrayTV.

Implementation of wave correction for arrays


Bioconductor version: 3.7

Wave correction for genotyping and copy number arrays

Author: Eitan Halper-Stromberg

Maintainer: Eitan Halper-Stromberg <Eitan177 at gmail.com>

Citation (from within R, enter citation("ArrayTV")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayTV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayTV")
ArrayTV Vignette PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Software
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 2)
Depends R (>= 2.14)
Imports methods, foreach, S4Vectors(>= 0.9.25), IRanges(>= 2.13.24), DNAcopy, oligoClasses(>= 1.21.3)
System Requirements
URL
See More
Suggests RColorBrewer, crlmm, ff, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, lattice, latticeExtra, RUnit, BiocGenerics
Linking To
Enhances doMC, doSNOW, doParallel
Depends On Me
Imports Me
Suggests Me VanillaICE
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ArrayTV_1.18.0.tar.gz
Windows Binary ArrayTV_1.18.0.zip
Mac OS X 10.11 (El Capitan) ArrayTV_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ArrayTV
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayTV
Package Short Url https://bioconductor.org/packages/ArrayTV/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive