AffyCompatible

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see AffyCompatible.

Affymetrix GeneChip software compatibility


Bioconductor version: 3.7

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

Author: Martin Morgan, Robert Gentleman

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("AffyCompatible")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AffyCompatible")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyCompatible")
Annotation retrieval with NetAffxResource PDF R Script
Retrieving MAGE and ARR sample attributes PDF R Script
Reference Manual PDF

Details

biocViews Infrastructure, Microarray, OneChannel, Software
Version 1.40.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License Artistic-2.0
Depends R (>= 2.7.0), XML (>= 2.8-1), RCurl (>= 0.8-1), methods
Imports Biostrings
System Requirements
URL
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Suggests
Linking To
Enhances
Depends On Me
Imports Me IdMappingRetrieval
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AffyCompatible_1.40.0.tar.gz
Windows Binary AffyCompatible_1.40.0.zip
Mac OS X 10.11 (El Capitan) AffyCompatible_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AffyCompatible
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AffyCompatible
Package Short Url https://bioconductor.org/packages/AffyCompatible/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive