ASpli

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ASpli.

Analysis of alternative splicing using RNA-Seq


Bioconductor version: 3.7

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Estefania Mancini <emancini at leloir.org.ar>

Citation (from within R, enter citation("ASpli")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")
Analysis of alternative splicing using ASpli PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version 1.6.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL
Depends methods, grDevices, stats, utils, parallel, edgeR
Imports GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, AnnotationDbi, Rsamtools, BiocStyle
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ASpli_1.6.0.tar.gz
Windows Binary ASpli_1.6.0.zip
Mac OS X 10.11 (El Capitan) ASpli_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ASpli
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASpli
Package Short Url https://bioconductor.org/packages/ASpli/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive