ABarray

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ABarray.

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.


Bioconductor version: 3.7

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>

Citation (from within R, enter citation("ABarray")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABarray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABarray")
ABarray gene expression PDF
ABarray gene expression GUI interface PDF
Reference Manual PDF

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.48.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL
Depends
Imports Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils
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Suggests limma, LPE
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABarray_1.48.0.tar.gz
Windows Binary ABarray_1.48.0.zip
Mac OS X 10.11 (El Capitan) ABarray_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABarray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABarray
Package Short Url https://bioconductor.org/packages/ABarray/
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Old Source Packages for BioC 3.7 Source Archive