yaqcaffy

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see yaqcaffy.

Affymetrix expression data quality control and reproducibility analysis


Bioconductor version: 3.6

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("yaqcaffy")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("yaqcaffy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")
yaqcaffy: Affymetrix quality control and MAQC reproducibility PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software
Version 1.38.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License Artistic-2.0
Depends simpleaffy(>= 2.19.3), methods
Imports stats4
System Requirements
URL
See More
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me qcmetrics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yaqcaffy_1.38.0.tar.gz
Windows Binary yaqcaffy_1.38.0.zip
Mac OS X 10.11 (El Capitan) yaqcaffy_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/yaqcaffy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yaqcaffy
Package Short Url https://bioconductor.org/packages/yaqcaffy/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive