treeio
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see treeio.
Base Classes and Functions for Phylogenetic Tree Input and Output
Bioconductor version: 3.6
Base classes and functions for parsing and exporting phylogenetic trees.
Author: Guangchuang Yu [aut, cre], Tommy Tsan-Yuk Lam [aut, ths], Casey Dunn [ctb], Bradley Jones [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R, enter
citation("treeio")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("treeio")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, Software |
| Version | 1.2.2 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.2) |
| Imports | ape, ggplot2, jsonlite, magrittr, methods, rvcheck |
| System Requirements | |
| URL | https://guangchuangyu.github.io/treeio |
| Bug Reports | https://github.com/GuangchuangYu/treeio/issues |
See More
| Suggests | Biostrings, ggtree(>= 1.7.5), knitr, prettydoc, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | ggtree |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | treeio_1.2.2.tar.gz |
| Windows Binary | treeio_1.2.2.zip |
| Mac OS X 10.11 (El Capitan) | treeio_1.2.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/treeio |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/treeio |
| Package Short Url | https://bioconductor.org/packages/treeio/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |