polyester

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see polyester.

Simulate RNA-seq reads


Bioconductor version: 3.6

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek

Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>

Citation (from within R, enter citation("polyester")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("polyester")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, Sequencing, Software
Version 1.14.1
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 3.0.0)
Imports Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package polyester_1.14.1.tar.gz
Windows Binary polyester_1.14.1.zip
Mac OS X 10.11 (El Capitan) polyester_1.14.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/polyester
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/polyester
Package Short Url https://bioconductor.org/packages/polyester/
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Old Source Packages for BioC 3.6 Source Archive