mQTL.NMR
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mQTL.NMR.
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Bioconductor version: 3.6
mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.
Author: Lyamine Hedjazi and Jean-Baptiste Cazier
Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>
citation("mQTL.NMR")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mQTL.NMR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mQTL.NMR")| Frequently Asked Questions | R Script | |
| How to use the mQTL.NMR package | R Script | |
| Reference Manual |
Details
| biocViews | Cheminformatics, Genetics, Metabolomics, SNP, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15.0) |
| Imports | qtl, GenABEL, MASS, outliers, graphics, stats, utils |
| System Requirements | |
| URL | http://www.ican-institute.org/tools/ |
See More
| Suggests | BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mQTL.NMR_1.12.0.tar.gz |
| Windows Binary | mQTL.NMR_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | mQTL.NMR_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mQTL.NMR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mQTL.NMR |
| Package Short Url | https://bioconductor.org/packages/mQTL.NMR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |