limmaGUI
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see limmaGUI.
GUI for limma package with two color microarrays
Bioconductor version: 3.6
A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.
Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb], Yifang Hu [ctb]
Maintainer: Yifang Hu <hu at wehi.edu.au>, Gordon Smyth <smyth at wehi.edu.au>, Keith Satterley <keith at wehi.edu.au>
citation("limmaGUI")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("limmaGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("limmaGUI")| Extracting limma objects from limmaGUI files | ||
| limmaGUI Vignette | R Script | |
| LinModIntro.pdf | ||
| Reference Manual |
Details
| biocViews | BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray |
| Version | 1.54.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>=2) |
| Depends | |
| Imports | limma, tcltk, BiocInstaller, tkrplot, R2HTML, xtable, gcrma, AnnotationDbi |
| System Requirements | |
| URL | http://bioinf.wehi.edu.au/limmaGUI/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | limmaGUI_1.54.0.tar.gz |
| Windows Binary | limmaGUI_1.54.0.zip |
| Mac OS X 10.11 (El Capitan) | limmaGUI_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/limmaGUI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/limmaGUI |
| Package Short Url | https://bioconductor.org/packages/limmaGUI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |