iSeq

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see iSeq.

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models


Bioconductor version: 3.6

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qmo at bcm.edu>

Citation (from within R, enter citation("iSeq")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")
iSeq PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Sequencing, Software
Version 1.30.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSeq_1.30.0.tar.gz
Windows Binary iSeq_1.30.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) iSeq_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSeq
Package Short Url https://bioconductor.org/packages/iSeq/
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Old Source Packages for BioC 3.6 Source Archive