gaucho
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gaucho.
Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering
Bioconductor version: 3.6
Use genetic algorithms to determine the relationship between clones in heterogenous populations such as cancer sequencing samples
Author: Alex Murison [aut, cre], Christopher Wardell [aut, cre]
Maintainer: Alex Murison <Alexander.Murison at icr.ac.uk>, Christopher Wardell <Christopher.Wardell at icr.ac.uk>
citation("gaucho")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gaucho")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gaucho")| An introduction to gaucho | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, SNP, Sequencing, Software, SomaticMutation |
| Version | 1.14.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.0), compiler, GA, graph, heatmap.plus, png, Rgraphviz |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gaucho_1.14.0.tar.gz |
| Windows Binary | gaucho_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | gaucho_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gaucho |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gaucho |
| Package Short Url | https://bioconductor.org/packages/gaucho/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |