gaggle

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gaggle.

Broadcast data between R and Gaggle


Bioconductor version: 3.6

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author: Paul Shannon <pshannon at systemsbiology.org>

Maintainer: Christopher Bare <cbare at systemsbiology.org>

Citation (from within R, enter citation("gaggle")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gaggle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaggle")
Gaggle Overview PDF R Script
Reference Manual PDF

Details

biocViews Annotation, DataImport, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.46.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL version 2 or newer
Depends R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17)
Imports
System Requirements
URL http://gaggle.systemsbiology.net/docs/geese/r/
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gaggle_1.46.0.tar.gz
Windows Binary gaggle_1.46.0.zip
Mac OS X 10.11 (El Capitan) gaggle_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gaggle
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gaggle
Package Short Url https://bioconductor.org/packages/gaggle/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive