flowAI

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see flowAI.

Automatic and interactive quality control for flow cytometry data


Bioconductor version: 3.6

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco, Hao Chen

Maintainer: Gianni Monaco <gianni.monaco at unibas.ch>

Citation (from within R, enter citation("flowAI")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowAI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, FlowCytometry, QualityControl, Software
Version 1.6.3
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils
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Suggests testthat, shiny, rmarkdown, knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowAI_1.6.3.tar.gz
Windows Binary flowAI_1.6.3.zip
Mac OS X 10.11 (El Capitan) flowAI_1.6.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowAI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowAI
Package Short Url https://bioconductor.org/packages/flowAI/
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Old Source Packages for BioC 3.6 Source Archive