apeglm
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see apeglm.
Approximate posterior estimation for GLM coefficients
Bioconductor version: 3.6
apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.
Author: Anqi Zhu, Joseph G. Ibrahim, Michael I. Love
Maintainer: Anqi Zhu <anqizhu at live.unc.edu>
Citation (from within R, enter
citation("apeglm")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("apeglm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Bayesian, DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software |
| Version | 1.0.3 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | DESeq2, airway, BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DESeq2 |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | apeglm_1.0.3.tar.gz |
| Windows Binary | apeglm_1.0.3.zip |
| Mac OS X 10.11 (El Capitan) | apeglm_1.0.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/apeglm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/apeglm |
| Package Short Url | https://bioconductor.org/packages/apeglm/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |