TPP

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see TPP.

Analyze thermal proteome profiling (TPP) experiments


Bioconductor version: 3.6

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber

Maintainer: Dorothee Childs <dorothee.childs at embl.de>

Citation (from within R, enter citation("TPP")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP")
TPP_introduction_1D PDF R Script
TPP_introduction_2D PDF R Script
TPP_introduction_NPARC PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews MassSpectrometry, Proteomics, Software
Version 3.6.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, sme, splines, stats, stringr, utils, VennDiagram, VGAM
System Requirements
URL
See More
Suggests BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TPP_3.6.0.tar.gz
Windows Binary TPP_3.6.0.zip
Mac OS X 10.11 (El Capitan) TPP_3.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TPP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TPP
Package Short Url https://bioconductor.org/packages/TPP/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive