RNAither

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RNAither.

Statistical analysis of high-throughput RNAi screens


Bioconductor version: 3.6

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Lars Kaderali <lars.kaderali at uni-greifswald.de>

Citation (from within R, enter citation("RNAither")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAither")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAither")
RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens PDF R Script
Reference Manual PDF

Details

biocViews Annotation, CellBasedAssays, GO, Preprocessing, QualityControl, Software, Visualization
Version 2.26.1
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License Artistic-2.0
Depends R (>= 2.10), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAither_2.26.1.tar.gz
Windows Binary RNAither_2.26.1.zip
Mac OS X 10.11 (El Capitan) RNAither_2.26.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAither
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAither
Package Short Url https://bioconductor.org/packages/RNAither/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive