ImmuneSpaceR

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see ImmuneSpaceR.

A Thin Wrapper around the ImmuneSpace Database


Bioconductor version: 3.6

Provides a convenient API for accessing data sets within ImmuneSpace (www.immunespace.org), the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

Author: Greg Finak [aut], Renan Sauteraud [aut], Mike Jiang [aut], Gil Guday [aut], Leo Dashevskiy [aut], Evan Henrich [aut], Ju Yeong Kim [aut], Raphael Gottardo [aut], ImmuneSpace Package Maintainer [cre, cph]

Maintainer: ImmuneSpace Package Maintainer <immunespace at gmail.com>

Citation (from within R, enter citation("ImmuneSpaceR")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ImmuneSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, Software, ThirdPartyClient
Version 1.6.2
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends
Imports utils, methods, data.table, httr, Rlabkey (>= 2.1.136), Biobase, pheatmap, ggplot2, scales, stats, gtools, gplots, reshape2, plotly, heatmaply (>= 0.7.0), rjson, rmarkdown, preprocessCore, parallel
System Requirements
URL https://github.com/RGLab/ImmuneSpaceR
Bug Reports https://github.com/RGLab/ImmuneSpaceR/issues
See More
Suggests knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ImmuneSpaceR_1.6.2.tar.gz
Windows Binary ImmuneSpaceR_1.6.2.zip
Mac OS X 10.11 (El Capitan) ImmuneSpaceR_1.6.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ImmuneSpaceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ImmuneSpaceR
Package Short Url https://bioconductor.org/packages/ImmuneSpaceR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive