ENVISIONQuery

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ENVISIONQuery.

Retrieval from the ENVISION bioinformatics data portal into R


Bioconductor version: 3.6

Tools to retrieve data from ENVISION, the Database for Annotation, Visualization and Integrated Discovery portal

Author: Alex Lisovich, Roger Day

Maintainer: Alex Lisovich <all67 at pitt.edu>, Roger Day <day01 at pitt.edu>

Citation (from within R, enter citation("ENVISIONQuery")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENVISIONQuery")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENVISIONQuery")
An R Package for retrieving data from EnVision into R objects. PDF R Script
Reference Manual PDF

Details

biocViews Annotation, Software
Version 1.26.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-2
Depends rJava, XML, utils
Imports
System Requirements
URL
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Suggests
Linking To
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Depends On Me
Imports Me IdMappingRetrieval
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ENVISIONQuery_1.26.0.tar.gz
Windows Binary ENVISIONQuery_1.26.0.zip
Mac OS X 10.11 (El Capitan) ENVISIONQuery_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ENVISIONQuery
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ENVISIONQuery
Package Short Url https://bioconductor.org/packages/ENVISIONQuery/
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Old Source Packages for BioC 3.6 Source Archive