rpx
This is the development version of rpx; for the stable release version, see rpx.
R Interface to the ProteomeXchange Repository
DOI: 10.18129/B9.bioc.rpx
Bioconductor version: Development (3.21)
The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.
Author: Laurent Gatto
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R, enter
citation("rpx")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rpx")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rpx")| An R interface to the ProteomeXchange repository | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient |
| Version | 2.15.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.5.0), methods |
| Imports | BiocFileCache, jsonlite, xml2, RCurl, curl, utils |
| System Requirements | |
| URL | https://github.com/lgatto/rpx |
| Bug Reports | https://github.com/lgatto/rpx/issues |
See More
| Suggests | Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MsExperiment, MSnbase, PSMatch, RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rpx_2.15.0.tar.gz |
| Windows Binary (x86_64) | rpx_2.15.0.zip |
| macOS Binary (x86_64) | rpx_2.15.0.tgz |
| macOS Binary (arm64) | rpx_2.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rpx |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rpx |
| Bioc Package Browser | https://code.bioconductor.org/browse/rpx/ |
| Package Short Url | https://bioconductor.org/packages/rpx/ |
| Package Downloads Report | Download Stats |