meshr
This is the development version of meshr; for the stable release version, see meshr.
Tools for conducting enrichment analysis of MeSH
Bioconductor version: Development (3.21)
A set of annotation maps describing the entire MeSH assembled using data from MeSH.
Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R, enter
citation("meshr")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("meshr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("meshr")| AnnotationHub-style MeSH ORA Framework from BioC 3.14 | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics |
| Version | 2.13.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0) |
| Imports | markdown, rmarkdown, BiocStyle, knitr, methods, stats, utils, fdrtool, MeSHDbi, Category, S4Vectors, BiocGenerics, RSQLite |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/rikenbit/meshr/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | scTensor |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | meshr_2.13.0.tar.gz |
| Windows Binary (x86_64) | meshr_2.13.0.zip |
| macOS Binary (x86_64) | meshr_2.13.0.tgz |
| macOS Binary (arm64) | meshr_2.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/meshr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/meshr |
| Bioc Package Browser | https://code.bioconductor.org/browse/meshr/ |
| Package Short Url | https://bioconductor.org/packages/meshr/ |
| Package Downloads Report | Download Stats |