MsBackendMassbank
This is the development version of MsBackendMassbank; for the stable release version, see MsBackendMassbank.
Mass Spectrometry Data Backend for MassBank record Files
Bioconductor version: Development (3.21)
Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.
Author: RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] (ORCID:
Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>
citation("MsBackendMassbank")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MsBackendMassbank")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendMassbank")| Description and usage of MsBackendMassbank | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Software |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0), Spectra(>= 1.15.10) |
| Imports | BiocParallel, S4Vectors, IRanges, methods, ProtGenerics(>= 1.35.3), MsCoreUtils, DBI, utils |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/MsBackendMassbank |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMassbank/issues |
See More
| Suggests | testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), RSQLite, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MsBackendMassbank_1.15.0.tar.gz |
| Windows Binary (x86_64) | MsBackendMassbank_1.15.0.zip (64-bit only) |
| macOS Binary (x86_64) | MsBackendMassbank_1.15.0.tgz |
| macOS Binary (arm64) | MsBackendMassbank_1.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MsBackendMassbank |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendMassbank |
| Bioc Package Browser | https://code.bioconductor.org/browse/MsBackendMassbank/ |
| Package Short Url | https://bioconductor.org/packages/MsBackendMassbank/ |
| Package Downloads Report | Download Stats |