Changes in version 0.99.5                        

Remove codes that are commented out.

                       Changes in version 0.99.4                        

user perspective/experience

  - documentation update about output values
  - output variable/names parameter added to many functions
  - validity checks for spatialCoords are added to related functions
  - for loops are gone.

                       Changes in version 0.99.3                        

code

  - sapply change to vapply.
  - validity checks on inputs are now added to all functions using
    either is(spe, "SpatialExperiment") or is(m, "matrix") etc.

vignette

  - Explanation of plots and algorithm inside different functions are
    now added to the vignette briefly.
  - BiocStyle are now used.
  - BiocStyle to hyperlink packages are now used.
  - Fixed typo

documentation

  - data description of the test data has been added.
  - cross-link key function have added to the package help page.
  - the equation and theory of the calcMetrics are now added in the help
    page.

other

  - Bioconductor installation instructions is now added to the readme
    file.
  - code coverage is now almost 85%.
  - The LICENSE placeholders is now edited.

                       Changes in version 0.99.0                        

First submission to Bioconductor.