vtpnet

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see vtpnet.

variant-transcription factor-phenotype networks


Bioconductor version: 3.17

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vtpnet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")
vtpnet: variant-transcription factor-network tools PDF R Script
Reference Manual PDF

Details

biocViews Network, Software
Version 0.40.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
System Requirements
URL
See More
Suggests MotifDb, VariantAnnotation, Rgraphviz
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vtpnet_0.40.0.tar.gz
Windows Binary vtpnet_0.40.0.zip
macOS Binary (x86_64) vtpnet_0.40.0.tgz
macOS Binary (arm64) vtpnet_0.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vtpnet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vtpnet
Bioc Package Browser https://code.bioconductor.org/browse/vtpnet/
Package Short Url https://bioconductor.org/packages/vtpnet/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive