tscR

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see tscR.

A time series clustering package combining slope and Frechet distances


Bioconductor version: 3.17

Clustering for time series data using slope distance and/or shape distance.

Author: Fernando Pérez-Sanz [aut, cre], Miriam Riquelme-Pérez [aut]

Maintainer: Fernando Pérez-Sanz <fernando.perez8 at um.es>

Citation (from within R, enter citation("tscR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tscR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tscR")
tscR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, DNAMethylation, GeneExpression, Microarray, Software
Version 1.11.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License Artistic-2.0
Depends R (>= 4.1.0), dplyr
Imports gridExtra, methods, dtw, class, kmlShape, graphics, cluster, RColorBrewer, grDevices, knitr, rmarkdown, prettydoc, grid, ggplot2, latex2exp, stats, SummarizedExperiment, GenomicRanges, IRanges, S4Vectors
System Requirements
URL
See More
Suggests testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tscR_1.11.0.tar.gz
Windows Binary tscR_1.11.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/tscR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tscR
Bioc Package Browser https://code.bioconductor.org/browse/tscR/
Package Short Url https://bioconductor.org/packages/tscR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive