scRNAseqApp
This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see scRNAseqApp.
A single-cell RNAseq Shiny app-package
Bioconductor version: 3.17
scRNAseqApp is a Shiny app package that allows users to visualize single cell data interactively. It was modified from ShinyCell and repackaged to a tool to show multiple data. It can visulize the data with multiple information side by side.
Author: Jianhong Ou [aut, cre] 
Maintainer: Jianhong Ou <jianhong.ou at duke.edu>
citation("scRNAseqApp")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scRNAseqApp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scRNAseqApp")| scRNAseqApp Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | RNASeq, SingleCell, Software, Visualization |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1 year) |
| License | GPL-3 |
| Depends | R (>= 4.3.0) |
| Imports | bibtex, bslib, circlize, ComplexHeatmap, data.table, DT, GenomicRanges, GenomeInfoDb, ggdendro, ggforce, ggplot2, ggrepel, ggridges, grDevices, grid, gridExtra, hdf5r, htmltools, IRanges, jsonlite, magrittr, methods, patchwork, plotly, RColorBrewer, RefManageR, Rsamtools, rtracklayer, S4Vectors, scales, scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager, slingshot, SingleCellExperiment, stats, tools, xfun, xml2, utils |
| System Requirements | |
| URL | https://github.com/jianhong/scRNAseqApp |
| Bug Reports | https://github.com/jianhong/scRNAseqApp/issues |
See More
| Suggests | rmarkdown, knitr, testthat, BiocStyle |
| Linking To | |
| Enhances | celldex, future, SingleR, SummarizedExperiment, tricycle |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scRNAseqApp_1.0.1.tar.gz |
| Windows Binary | scRNAseqApp_1.0.1.zip (64-bit only) |
| macOS Binary (x86_64) | scRNAseqApp_1.0.1.tgz |
| macOS Binary (arm64) | scRNAseqApp_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scRNAseqApp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scRNAseqApp |
| Bioc Package Browser | https://code.bioconductor.org/browse/scRNAseqApp/ |
| Package Short Url | https://bioconductor.org/packages/scRNAseqApp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.17 | Source Archive |