riboSeqR

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments


Bioconductor version: 3.17

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("riboSeqR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Genetics, RiboSeq, Sequencing, Software, Visualization
Version 1.34.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 3.0.2), methods, GenomicRanges, abind
Imports Rsamtools, IRanges, baySeq, GenomeInfoDb, seqLogo
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/riboSeqR
Package Short Url https://bioconductor.org/packages/riboSeqR/
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Old Source Packages for BioC 3.17 Source Archive