clusterSeq

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see clusterSeq.

Clustering of high-throughput sequencing data by identifying co-expression patterns


Bioconductor version: 3.17

Identification of clusters of co-expressed genes based on their expression across multiple (replicated) biological samples.

Author: Thomas J. Hardcastle & Irene Papatheodorou

Maintainer: Thomas J. Hardcastle <tjh48 at cam.ac.uk>

Citation (from within R, enter citation("clusterSeq")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clusterSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Clustering, DifferentialExpression, GeneExpression, MultipleComparison, Sequencing, Software
Version 1.24.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL-3
Depends R (>= 3.0.0), methods, BiocParallel, baySeq, graphics, stats, utils
Imports BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/clusterSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clusterSeq
Package Short Url https://bioconductor.org/packages/clusterSeq/
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Old Source Packages for BioC 3.17 Source Archive