clstutils

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see clstutils.

Tools for performing taxonomic assignment


Bioconductor version: 3.17

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Citation (from within R, enter citation("clstutils")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clstutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")
clst PDF R Script
clstutils PDF R Script
Reference Manual PDF

Details

biocViews Classification, QualityControl, Sequencing, Software, Visualization
Version 1.48.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-3
Depends R (>= 2.10), clst, rjson, ape
Imports lattice, RSQLite
System Requirements
URL
See More
Suggests RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clstutils_1.48.0.tar.gz
Windows Binary clstutils_1.48.0.zip
macOS Binary (x86_64) clstutils_1.48.0.tgz
macOS Binary (arm64) clstutils_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/clstutils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clstutils
Bioc Package Browser https://code.bioconductor.org/browse/clstutils/
Package Short Url https://bioconductor.org/packages/clstutils/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive