SUITOR

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SUITOR.

Selecting the number of mutational signatures through cross-validation


Bioconductor version: 3.17

An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.

Author: DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]

Maintainer: Bill Wheeler <wheelerb at imsweb.com>

Citation (from within R, enter citation("SUITOR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SUITOR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SUITOR")
SUITOR: selecting the number of mutational signatures PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Genetics, Software, SomaticMutation
Version 1.2.0
In Bioconductor since BioC 3.16 (R-4.2) (1.5 years)
License GPL-2
Depends R (>= 4.2.0)
Imports stats, utils, graphics, ggplot2, BiocParallel
System Requirements
URL
Bug Reports https://github.com/wheelerb/SUITOR/issues
See More
Suggests devtools, MutationalPatterns, RUnit, BiocManager, BiocGenerics, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SUITOR_1.2.0.tar.gz
Windows Binary SUITOR_1.2.0.zip
macOS Binary (x86_64) SUITOR_1.2.0.tgz
macOS Binary (arm64) SUITOR_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SUITOR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SUITOR
Bioc Package Browser https://code.bioconductor.org/browse/SUITOR/
Package Short Url https://bioconductor.org/packages/SUITOR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive