PROPER

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see PROPER.

PROspective Power Evaluation for RNAseq


Bioconductor version: 3.17

This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.

Author: Hao Wu

Maintainer: Hao Wu <hao.wu at emory.edu>

Citation (from within R, enter citation("PROPER")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PROPER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPER")
Power and Sample size analysis for gene expression from RNA-seq PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.32.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL
Depends R (>= 3.3)
Imports edgeR
System Requirements
URL
See More
Suggests BiocStyle, DESeq2, DSS, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PROPER_1.32.0.tar.gz
Windows Binary PROPER_1.32.0.zip (64-bit only)
macOS Binary (x86_64) PROPER_1.32.0.tgz
macOS Binary (arm64) PROPER_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PROPER
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PROPER
Bioc Package Browser https://code.bioconductor.org/browse/PROPER/
Package Short Url https://bioconductor.org/packages/PROPER/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive