PAIRADISE

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see PAIRADISE.

PAIRADISE: Paired analysis of differential isoform expression


Bioconductor version: 3.17

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Author: Levon Demirdjian, Ying Nian Wu, Yi Xing

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>

Citation (from within R, enter citation("PAIRADISE")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PAIRADISE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PAIRADISE")
PAIRADISE HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License MIT + file LICENSE
Depends R (>= 3.6), nloptr
Imports SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel
System Requirements
URL
See More
Suggests testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PAIRADISE_1.16.0.tar.gz
Windows Binary PAIRADISE_1.16.0.zip
macOS Binary (x86_64) PAIRADISE_1.16.0.tgz
macOS Binary (arm64) PAIRADISE_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PAIRADISE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PAIRADISE
Bioc Package Browser https://code.bioconductor.org/browse/PAIRADISE/
Package Short Url https://bioconductor.org/packages/PAIRADISE/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive