OncoScore

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see OncoScore.

A tool to identify potentially oncogenic genes


Bioconductor version: 3.17

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Author: Luca De Sano [cre, aut] , Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut] , Roberta Spinelli [ctb]

Maintainer: Luca De Sano <luca.desano at gmail.com>

Citation (from within R, enter citation("OncoScore")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OncoScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OncoScore")
Introduction HTML R Script
Running OncoScore HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, Software
Version 1.28.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License file LICENSE
Depends R (>= 4.1.0)
Imports biomaRt, grDevices, graphics, utils, methods
System Requirements
URL https://github.com/danro9685/OncoScore
Bug Reports https://github.com/danro9685/OncoScore
See More
Suggests BiocGenerics, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OncoScore_1.28.0.tar.gz
Windows Binary OncoScore_1.28.0.zip
macOS Binary (x86_64) OncoScore_1.28.0.tgz
macOS Binary (arm64) OncoScore_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OncoScore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OncoScore
Bioc Package Browser https://code.bioconductor.org/browse/OncoScore/
Package Short Url https://bioconductor.org/packages/OncoScore/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive