EBSEA

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see EBSEA.

Exon Based Strategy for Expression Analysis of genes


Bioconductor version: 3.17

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Author: Arfa Mehmood, Asta Laiho, Laura L. Elo

Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>

Citation (from within R, enter citation("EBSEA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSEA")
EBSEA HTML R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, GeneExpression, Sequencing, Software
Version 1.28.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-2
Depends R (>= 4.0.0)
Imports DESeq2, graphics, stats, EmpiricalBrownsMethod
System Requirements
URL
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBSEA_1.28.0.tar.gz
Windows Binary EBSEA_1.28.0.zip (64-bit only)
macOS Binary (x86_64) EBSEA_1.28.0.tgz
macOS Binary (arm64) EBSEA_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBSEA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EBSEA
Bioc Package Browser https://code.bioconductor.org/browse/EBSEA/
Package Short Url https://bioconductor.org/packages/EBSEA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive