Clonality

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Clonality.

Clonality testing


Bioconductor version: 3.17

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

Citation (from within R, enter citation("Clonality")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Clonality")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Clonality")
Clonality PDF R Script
Reference Manual PDF

Details

biocViews Classification, CopyNumber, Diagnosis, Mutations, Software, aCGH, metastasis
Version 1.47.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-3
Depends R (>= 2.12.2), DNAcopy
Imports grDevices, graphics, stats, utils
System Requirements
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Suggests gdata
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Clonality_1.47.0.tar.gz
Windows Binary Clonality_1.47.0.zip
macOS Binary (x86_64)
macOS Binary (arm64) Clonality_1.47.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Clonality
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Clonality
Bioc Package Browser https://code.bioconductor.org/browse/Clonality/
Package Short Url https://bioconductor.org/packages/Clonality/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive